Full length vs targeted 16S/18S/ITS amplicons: Sequence length and Identification Accuracy of Microbiomes for Biomarker Discovery
Oct
1
11:00 AM11:00

Full length vs targeted 16S/18S/ITS amplicons: Sequence length and Identification Accuracy of Microbiomes for Biomarker Discovery

Join Dr. Vinayak Kapatral and learn about full length vs targeted length amplicon sequencing for microbiome biomarker discovery.

October 1st, 2024 at 11:00 AM (CT) / 12:00 PM (ET) / 9:00 AM (PT)


Sign Up Today

In this webinar you will learn about:

  • Amplicon sequencing approaches

    • Targeted Illumina based V1-V3 or V3-V4 short amplicons

    • Full length Pacbio/Oxford Nanopore based amplicons

    • Libraries, kits, reactions, read length, and coverage considerations

  • Denoising Amplicon Sequencing Samples

  • Taxonomy and Phylogenetic Analysis (OTUs or ASVs)

  • Principal Coordinates Analysis (MDS, NMDS, Bray-Curtis, UniFrac, Jaccard)

  • Richness Estimates (Chao1, ACE, Shannon, Simpson etc)

  • Linear Discriminant Analysis (LDA) with LEfSe computations

  • ERGO’s integrated Metagenome Analysis and Visualization Tools

  • and much more!

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Webinar: Best Practices in  Transcriptomics & Metatranscriptomics
Sep
17
11:00 AM11:00

Webinar: Best Practices in Transcriptomics & Metatranscriptomics

Join Dr. Vinayak Kapatral and learn about Best Practices in Transcriptomics & Metatranscriptomics

Tuesday September 17th 2024 at 11:00 AM (CT) / 12:00 PM (ET) / 9:00 AM (PT)

Sign Up Today


About this webinar

In this webinar you will learn about:

  • RNA Isolation, rRNA Depletion, QC

  • Library prep & sequencing

  • Bar coding using unique sequences

  • Pooling & Sequencing

  • Data Processing & Trimming

  • Read Alignment vs pseudo-alignment

  • Transcriptome Analysis techniques such as

    • Clustering: Distance and Linkage choices

    • Differential Gene Analysis (DGE): DESeq2, EdgeR, Limma

    • Gene Set Enrichment Analysis (GSEA)

  • Transcriptome and Metatranscriptome Assembly

  • Visualizing Metatranscriptome Data in ERGO

  • Mapping to ERGO, BioCyc & KEGG pathways

Speaker Profile

Vinayak Kapatral, PhD is the president and CEO of Igenbio, Inc. He brings over 23 years experience answering biology questions using genomics with dozens of relevant publications with thousands of citations.


About Igenbio

We’re here to help you from pellet to plot.  Our scientists have broad experience in both in silico and wet lab sequencing, research and development with more than 100 relevant publications in these areas. Igenbio has a proven track record of delivering scientific results for academic, governmental, and industrial institutions for two decades.


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Webinar: Transcriptomics Studies of Virulence and Drug Tolerance in C auris
May
30
10:00 AM10:00

Webinar: Transcriptomics Studies of Virulence and Drug Tolerance in C auris

Join Dr. Vinayak Kapatral and learn about the use of transcriptomics studies in deciphering virulence and drug tolerance in Candida auris

Thursday May 30th 2024 at 10:00 AM (CT) / 11:00 AM (ET) / 8:00 AM (PT)

Sign Up Today


About this webinar

In this webinar you will learn about:

  • Poly(A) mRNA Isolation, QC

  • Library preparation & total RNA-Sequencing

  • Read alignment to assembled transcripts

  • Clustering Analysis

  • Differential Gene Expression (DESeq2, EdgeR, Limma)

  • Metabolic Pathway Analysis including: ERGO, BioCyc, and KEGG

  • Gene set enrichment using GAGE

Speaker Profile

Vinayak Kapatral, PhD is the president and CEO of Igenbio, Inc. He brings over 25 years experience answering biology questions using genomics with dozens of relevant publications with thousands of citations.


About Igenbio

We’re here to help you from pellet to plot.  Our scientists have broad experience in both in silico and wet lab sequencing, research and development with more than 100 relevant publications in these areas. Igenbio has a proven track record of delivering scientific results for academic, governmental, and industrial institutions for two decades.


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Webinar: Best Practices in  Transcriptomics & Metatranscriptomics
Mar
21
10:30 AM10:30

Webinar: Best Practices in Transcriptomics & Metatranscriptomics

Join Dr. Vinayak Kapatral and learn about Best Practices in Transcriptomics & Metatranscriptomics

Thursday March 21st 2024 at 10:30 AM (CT) / 11:30 AM (ET) / 8:30 AM (PT)

Sign Up Today


About this webinar

In this webinar you will learn about:

  • RNA Isolation, rRNA Depletion, QC

  • Library prep & sequencing

  • Bar coding using unique sequences

  • Pooling & Sequencing

  • Data Processing & Trimming

  • Read Alignment vs pseudo-alignment

  • Transcriptome Analysis techniques such as

    • Clustering: Distance and Linkage choices

    • Differential Gene Analysis (DGE): DESeq2, EdgeR, Limma

    • Gene Set Enrichment Analysis (GSEA)

  • Transcriptome and Metatranscriptome Assembly

  • Visualizing Metatranscriptome Data in ERGO

  • Mapping to ERGO, BioCyc & KEGG pathways

Speaker Profile

Vinayak Kapatral, PhD is the president and CEO of Igenbio, Inc. He brings over 25 years experience answering biology questions using genomics with dozens of relevant publications with thousands of citations.


About Igenbio

We’re here to help you from pellet to plot.  Our scientists have broad experience in both in silico and wet lab sequencing, research and development with more than 100 relevant publications in these areas. Igenbio has a proven track record of delivering scientific results for academic, governmental, and industrial institutions for two decades.


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Webinar: Standards in Amplicon Analysis and Microbiome Discovery.
Jan
19
11:00 AM11:00

Webinar: Standards in Amplicon Analysis and Microbiome Discovery.

Join Dr. Vinayak Kapatral and learn about Standards in Amplicon Analysis and Microbiome Discovery.

January 19th 2024 at 11:00 AM (CT) / 12:00 PM (ET) / 9:00 AM (PT)

Sign Up Today

In this webinar you will learn about:

  • Latest technology to 'denoise' your amplicon sequencing samples to discover which taxa are present.

  • Standard metagenome analysis tools that are integrated in ERGO such as Phyloseq, Vegan, and LEfSe.

  • Utilizing Linear Discriminate Analysis (LDA) with LEfSe to identify taxa that distinguish your experimental groups.

  • ERGO’s interactive visualizations such as our network diagram which identifies statistically significant biological differences.

  • Principal Coordinates Analysis (PCoA), an essential technique to verify controls and expected sample groups

  • Richness estimates such as Shannon, Chao1, and others that reveal the level of diversity among your sample groups

  • and much more!

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Webinar: Applications of transcriptomics in ethanol fermentation
Oct
26
10:00 AM10:00

Webinar: Applications of transcriptomics in ethanol fermentation

Join Vinayak Kapatral, Ph.D and Ananda Nanjundaswamy, Ph.D and learn about “Standards in Transcriptomics”

Applications of transcriptomics in ethanol fermentation: A Case Study.

Thursday October 26th 2023 at 10:00 AM (CT) / 11:00 AM (ET) / 8:00 AM (PT)

Sign Up Today


About this webinar

In this webinar you will learn about:

  • RNA Isolation, rRNA Depletion, QC

  • Library prep & sequencing

  • Read Alignment vs pseudo-alignment

  • Transcriptome Analysis techniques such as

    • Clustering: Distance and Linkage choices

    • Differential Gene Analysis (DGE): DESeq2, EdgeR, Limma

    • Gene Set Enrichment Analysis (GSEA)

  • Visualizing Metatranscriptome Data in ERGO

  • Mapping to ERGO, BioCyc & KEGG pathways

  • GAGE Analysis, Pathway enrichment

  • Case Study: Applications of transcriptomics in ethanol fermentation.

Speaker Profiles

Vinayak Kapatral, PhD is the president and CEO of Igenbio, Inc. He brings over 25 years experience answering biology questions using genomics with dozens of relevant publications with thousands of citations.

Ananda Nanjundaswamy, Ph.D is the Richard and Janice Vetter Endowed Associate Professor in Biotechnology at South Dakota State University. He has comprehensive knowledge base in agriculture, biochemistry, fermentation technology and bioprocessing.

 

About Igenbio

We’re here to help you from pellet to plot.  Our scientists have broad experience in both in silico and wet lab sequencing, research and development with more than 100 relevant publications in these areas. Igenbio has a proven track record of delivering scientific results for academic, governmental, and industrial institutions for two decades.


View Event →
Jul
30
to Aug 2

Join Igenbio at the Society for Industrial Microbiology and Biotechnology Meeting July 30th through August 2nd.

  • Hyatt Regency Minneapolis (map)
  • Google Calendar ICS

Join Dr. Vinayak Kapatral and colleagues at our booth at the Society for Industrial Microbiology and Biotechnology Meeting July 30th through August 2nd. We will be demonstrating ERGO's capabilities, including Workflows, RNA-Seq, Metagenome Analysis, Variant Analytics, and more. If you would like to arrange a private demonstration of ERGO or meeting about Igenbio services please fill out the form below.

 

Igenbio

@ SIMB 2022

Igenbio

@ SIMB 2019

Igenbio

@ SIMB 2018

Igenbio

@ SIMB 2017

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Webinar: Best Practices in  Transcriptomics & Metatranscriptomics
Jun
22
10:30 AM10:30

Webinar: Best Practices in Transcriptomics & Metatranscriptomics

Join Dr. Vinayak Kapatral and learn about Best Practices in Transcriptomics & Metatranscriptomics

Thursday June 22nd 2023 at 10:30 AM (CT) / 11:30 AM (ET) / 8:30 AM (PT)

Sign Up Today


About this webinar

In this webinar you will learn about:

  • RNA Isolation, rRNA Depletion, QC

  • Library prep & sequencing

  • Bar coding using unique sequences

  • Pooling & Sequencing

  • Data Processing & Trimming

  • Read Alignment vs pseudo-alignment

  • Transcriptome Analysis techniques such as

    • Clustering: Distance and Linkage choices

    • Differential Gene Analysis (DGE): DESeq2, EdgeR, Limma

    • Gene Set Enrichment Analysis (GSEA)

  • Transcriptome and Metatranscriptome Assembly

  • Visualizing Metatranscriptome Data in ERGO

  • Mapping to ERGO, BioCyc & KEGG pathways

Speaker Profile

Vinayak Kapatral, PhD is the president and CEO of Igenbio, Inc. He brings over 23 years experience answering biology questions using genomics with dozens of relevant publications with thousands of citations.


About Igenbio

We’re here to help you from pellet to plot.  Our scientists have broad experience in both in silico and wet lab sequencing, research and development with more than 100 relevant publications in these areas. Igenbio has a proven track record of delivering scientific results for academic, governmental, and industrial institutions for two decades.


View Event →
Webinar: Best Practices in Metagenome Assembled Genomes & Metatranscriptomics
May
4
10:30 AM10:30

Webinar: Best Practices in Metagenome Assembled Genomes & Metatranscriptomics

Join Dr. Vinayak Kapatral and learn about Best Practices in Metagenome Assembled Genomes & Metatranscriptomics

Thursday May 4th 2023 at 10:30 AM (CT) / 11:30 AM (ET) / 8:30 AM (PT)

Sign Up Today


About this webinar

In this webinar you will learn about:

  • Total gDNA isolation

  • Illumina library prep & sequencing

  • Oxford nanopore prep & sequencing

  • Metagenome Assembly and Genome Binning

  • Metagenome Assembled Genome (MAG) Extraction & Quality Assessment

  • Gene Prediction and Functional Annotation

  • How to Identify the taxa that contribute to functions or pathways in a metagenome

  • Statistical Analysis techniques PCoA, LEfSe, Richness Estimates, and more

  • Metatranscriptome Assembly

  • Visualizing Metatranscriptome Data in ERGO

  • Mapping to ERGO, BioCyc & KEGG pathways

Speaker Profile

Vinayak Kapatral, PhD is the president and CEO of Igenbio, Inc. He brings over 23 years experience answering biology questions using genomics with dozens of relevant publications with thousands of citations.


About Igenbio

We’re here to help you from pellet to plot.  Our scientists have broad experience in both in silico and wet lab sequencing, research and development with more than 100 relevant publications in these areas. Igenbio has a proven track record of delivering scientific results for academic, governmental, and industrial institutions for two decades.


View Event →
Webinar: Transcriptome Data Analysis Techniques
Feb
2
10:30 AM10:30

Webinar: Transcriptome Data Analysis Techniques

Join Dr. Vinayak Kapatral for a webinar entitled “Transcriptome Data Analysis Techniques”.

February 2nd at 10:30 AM (CT) / 11:30 AM (ET) / 8:30 AM (PT)

Sign Up Today

In this webinar you will learn about:

  • Key strengths and weaknesses of using different RNA-Seq quantification tools such as kallisto, salmon, featureCounts, and others.

  • Computing differential gene expression using statistical tools like Limma, DESeq2, edgeR

  • Projection of expression data on KEGG pathways in ERGO

  • Gene set enrichment analysis using GAGE to capture subtle metabolic shifts

  • and much more!

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Webinar: Functionally Profiling Microbial Communities in Amplicon Sequencing
Nov
3
10:30 AM10:30

Webinar: Functionally Profiling Microbial Communities in Amplicon Sequencing

Join Dr. Vinayak Kapatral in learning about functionally profiling microbial communities in amplicon sequencing.

Thursday November 3rd 2022 at 10:30 AM (CT) / 11:30 AM (ET) / 8:30 AM (PT)

Sign Up Today


About this webinar

In this webinar you will learn about:

  • Amplicon (16S, 18S, ITS, others) Analysis Techniques

  • Phylogenetic Analysis and Taxonomic Abundance

  • Community Pathway & Metabolic Assessment

  • Gene Prediction and Functional Annotation

  • How to Identify the taxa that contribute to functions or pathways in a metagenome

  • Statistical Analysis techniques PCoA, LEfSe, Richness Estimates, and more

Speaker Profile

Vinayak Kapatral, PhD is the president and CEO of Igenbio, Inc. He brings over 21 years experience answering biology questions using genomics with dozens of relevant publications with thousands of citations.


About Igenbio

We’re here to help you from pellet to plot.  Our scientists have broad experience in both in silico and wet lab sequencing, research and development with more than 100 relevant publications in these areas. Igenbio has a proven track record of delivering scientific results for academic, governmental, and industrial institutions for two decades.


View Event →
Aug
7
to Aug 10

Join Igenbio at the Society for Industrial Microbiology and Biotechnology Meeting August 7th through August 10th.

  • Hyatt Regency San Francisco (map)
  • Google Calendar ICS

Join Dr. Vinayak Kapatral and colleagues at our booth at the Society for Industrial Microbiology and Biotechnology Meeting August 7th through August 10th. We will be demonstrating ERGO's new capabilities, including Workflows, RNA-Seq, Metagenome Analysis, Variant Analytics, and more. If you would like to arrange a private demonstration of ERGO or meeting about Igenbio services please fill out the form below.

 

Igenbio

@ SIMB 2019

Igenbio

@ SIMB 2018

Igenbio

@ SIMB 2017

View Event →
Webinar: Best Practices in Microbiome Analysis
Jul
28
10:30 AM10:30

Webinar: Best Practices in Microbiome Analysis

Join Dr. Vinayak Kapatral and learn about Best Practices in Microbiome Analysis.

Wednesday July 28th 2022 at 10:30 AM (CT) / 11:30 AM (ET) / 8:30 AM (PT)

Sign Up Today


About this webinar

In this webinar you will learn about:

  • Amplicon (16S, 18S, ITS, others) Analysis Techniques

  • Metagenome Assembly and Genome Binning

  • Metagenome Assembled Genome (MAG) Extraction & Quality Assessment

  • Gene Prediction and Functional Annotation

  • How to Identify the taxa that contribute to functions or pathways in a metagenome

  • Statistical Analysis techniques PCoA, LEfSe, Richness Estimates, and more

Speaker Profile

Vinayak Kapatral, PhD is the president and CEO of Igenbio, Inc. He brings over 21 years experience answering biology questions using genomics with dozens of relevant publications with thousands of citations.


About Igenbio

We’re here to help you from pellet to plot.  Our scientists have broad experience in both in silico and wet lab sequencing, research and development with more than 100 relevant publications in these areas. Igenbio has a proven track record of delivering scientific results for academic, governmental, and industrial institutions for two decades.


View Event →
Webinar: Best Practices in Microbiome Analysis
Apr
5
10:30 AM10:30

Webinar: Best Practices in Microbiome Analysis

Join Dr. Vinayak Kapatral and learn about Best Practices in Microbiome Analysis.

Wednesday April 5th 2022 at 10:30 AM (CT) / 11:30 AM (ET) / 8:30 AM (PT)

Sign Up Today


About this webinar

In this webinar you will learn about:

  • Amplicon (16S, 18S, ITS, others) Analysis Techniques

  • Metagenome Assembly and Genome Binning

  • Metagenome Assembled Genome (MAG) Extraction & Quality Assessment

  • Gene Prediction and Functional Annotation

  • How to Identify the taxa that contribute to functions or pathways in a metagenome

  • Statistical Analysis techniques PCoA, LEfSe, Richness Estimates, and more

Speaker Profile

Vinayak Kapatral, PhD is the president and CEO of Igenbio, Inc. He brings over 21 years experience answering biology questions using genomics with dozens of relevant publications with thousands of citations.


About Igenbio

We’re here to help you from pellet to plot.  Our scientists have broad experience in both in silico and wet lab sequencing, research and development with more than 100 relevant publications in these areas. Igenbio has a proven track record of delivering scientific results for academic, governmental, and industrial institutions for two decades.


View Event →
Webinar: Best Practices in Antimicrobial Resistance Detection and Identification
Mar
9
10:30 AM10:30

Webinar: Best Practices in Antimicrobial Resistance Detection and Identification

Join Dr. Vinayak Kapatral and learn about Best Practices in Antimicrobial Resistance Detection and Identification.

Wednesday March 9th 2022 at 10:30 AM (CT) / 11:30 AM (ET) / 8:30 AM (PT)

In this webinar you will learn about:

  • Best Practices in Sequencing Methods for Completing Microbial Genomes

  • Determining Genome Completeness

  • Strain Confirmation

  • Gene Prediction

  • Antimicrobial Resistance Functional Prediction

    • Specific AMR databases and tools, such as: VFDB, NCBI ARMFinderPlus, Resfinder, ARG-ANNOT, MEGARES, ecoli_vf, ecoh, and other.

    • Pathway-based methods using ERGO & KEGG Pathways.

  • Detection of Antimicrobial Resistance in Metagenomes

  • and much more!


Sign Up Today

View Event →
Webinar: Learn How Denoising & Linear Discriminant Analysis Can Aid in Microbiome Biomarker Discovery.
Jan
20
10:00 AM10:00

Webinar: Learn How Denoising & Linear Discriminant Analysis Can Aid in Microbiome Biomarker Discovery.

Join Dr. Vinayak Kapatral and learn how denoising & linear discriminate analysis can aid in microbiome biomarker discovery.

January 20th 2022 at 10:00 AM (CT) / 11:00 AM (ET) / 8:00 AM (PT)

In this webinar you will learn about:

  • Latest technology to 'denoise' your amplicon sequencing samples to discover which taxa are present.

  • Standard metagenome analysis tools that are integrated in ERGO such as Phyloseq, Vegan, and LEfSe.

  • Utilizing Linear Discriminate Analysis (LDA) with LEfSe to identify taxa that distinguish your experimental groups.

  • ERGO’s interactive visualizations such as our network diagram which identifies statistically significant biological differences.

  • Principal Coordinates Analysis (PCoA), an essential technique to verify controls and expected sample groups

  • Richness estimates such as Shannon, Chao1, and others that reveal the level of diversity among your sample groups

  • and much more!

Sign Up Today

View Event →
Webinar -  SARS-CoV2 Genome Surveillance and Variant Detection
Sep
16
10:30 AM10:30

Webinar - SARS-CoV2 Genome Surveillance and Variant Detection

unsplash-image-w9KEokhajKw.jpg

Join Vinayak Kapatral, Ph.D. & Shrihari Kadkol, M.D., Ph.D. for a webinar entitled “SARS-CoV2 Genome Surveillance and Variant Detection”.

September 16th 2021 at 10:30 AM (CT) / 11:30 AM (ET) / 8:30 AM (PT)

Sign Up Today

In this webinar you will learn about:

  • Sample Collection & Preparation

  • qPCR Reactions & Cycle Thresholds

  • PCR Amplification (Techniques & Pro’s & Con’s of Available Kits)

  • Genome Sequencing

  • Sequence Assembly Techniques

  • Variant Detection & Annotation

  • Lineage & VOC Assignment (Alpha, Delta, Mu, …)


Speakers

shrihari_cropped.png

Shrihari Kadkol, M.D., Ph.D.

Associate Professor

Director of Molecular Pathology

The University of Illinois at Chicago

vinayak_cropped.png

Vinayak Kapatral, Ph.D.

President & CEO

Igenbio, Inc.

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Webinar-  Shotgun Metagenomics: From Pellet to Plot
Aug
5
11:00 AM11:00

Webinar- Shotgun Metagenomics: From Pellet to Plot

Join Dr. Vinayak Kapatral for a webinar entitled “Shotgun Metagenomics: From Pellet to Plot”.

August 5th 2021 at 11:00 AM (CT) / 12:00 PM (ET) / 9:00 AM (PT)

Sign Up Today

In this webinar you will learn about:

  • Experimental Design

  • The entire analysis pipeline, including:

    • Assembly

    • Gene Prediction

    • Taxonomic Prediction

    • Functional Annotation

    • Genome Binning

    • Quality Assessment

  • Learn new insights by filtering taxonomy by function or pathway

  • Explore each the contributions of a taxa to a pathway with key visualizations.

  • Statistical Analysis including PCA, PCoA, LEfSe, Richness Estimates, and DESeq2

  • and much more!

View Event →
Webinar: Transcriptome Data Analysis Techniques
Jun
17
11:00 AM11:00

Webinar: Transcriptome Data Analysis Techniques

Join Dr. Vinayak Kapatral for a webinar entitled “Transcriptome Data Analysis Techniques”.

June 17th 2021 at 11:00 AM (CT) / 12:00 PM (ET) / 9:00 AM (PT)

Sign Up Today

In this webinar you will learn about:

  • Key strengths and weaknesses of using different RNA-Seq quantification tools such as kallisto, salmon, featureCounts, and others.

  • Computing differential gene expression using statistical tools like Limma, DESeq2, edgeR

  • Projection of expression data on KEGG pathways in ERGO

  • Gene set enrichment analysis using GAGE to capture subtle metabolic shifts

  • and much more!

View Event →
May
27
10:30 AM10:30

Webinar: Learn How Denoising & Linear Discriminant Analysis Can Aid in Microbiome Biomarker Discovery.

Join Dr. Vinayak Kapatral and learn how denoising & linear discriminate analysis can aid in microbiome biomarker discovery.

May 27th 2021 at 10:30 AM (CT) / 11:30 AM (ET) / 8:30 AM (PT)

In this webinar you will learn about:

  • Latest technology to 'denoise' your amplicon sequencing samples to discover which taxa are present.

  • Standard metagenome analysis tools that are integrated in ERGO such as Phyloseq, Vegan, and LEfSe.

  • Utilizing Linear Discriminate Analysis (LDA) with LEfSe to identify taxa that distinguish your experimental groups.

  • ERGO’s interactive visualizations such as our network diagram which identifies statistically significant biological differences.

  • Principal Coordinates Analysis (PCoA), an essential technique to verify controls and expected sample groups

  • Richness estimates such as Shannon, Chao1, and others that reveal the level of diversity among your sample groups

  • and much more!

Sign Up Today

View Event →
Mar
25
10:30 AM10:30

Webinar: Learn How Denoising & Linear Discriminant Analysis Can Aid in Microbiome Biomarker Discovery.

Join Dr. Vinayak Kapatral and learn how denoising & linear discriminate analysis can aid in microbiome biomarker discovery.

March 25th 2021 at 10:30 AM (CT) / 11:30 AM (ET) / 8:30 AM (PT)

Screen Shot 2021-03-09 at 2.23.18 PM.png

In this webinar you will learn about:

  • Latest technology to 'denoise' your amplicon sequencing samples to discover which taxa are present.

  • Standard metagenome analysis tools that are integrated in ERGO such as Phyloseq, Vegan, and LEfSe.

  • Utilizing Linear Discriminate Analysis (LDA) with LEfSe to identify taxa that distinguish your experimental groups.

  • ERGO’s interactive visualizations such as our network diagram which identifies statistically significant biological differences.

  • Principal Coordinates Analysis (PCoA), an essential technique to verify controls and expected sample groups

  • Richness estimates such as Shannon, Chao1, and others that reveal the level of diversity among your sample groups

  • and much more!

Sign Up Today

View Event →
Mar
5
11:30 AM11:30

Webinar: Transcriptome Data Analysis Techniques

Join Dr. Vinayak Kapatral for a webinar entitled “Transcriptome Data Analysis Techniques”.

March 5th 2021 at 11:30 AM (CT) / 12:30 PM (ET) / 9:30 AM (PT)

Sign Up Today

In this webinar you will learn about:

  • Key strengths and weaknesses of using different RNA-Seq quantification tools such as kallisto, salmon, featureCounts, and others.

  • Computing differential gene expression using statistical tools like Limma, DESeq2, edgeR

  • Projection of expression data on KEGG pathways in ERGO

  • Gene set enrichment analysis using GAGE to capture subtle metabolic shifts

  • and much more!

View Event →
Feb
3
11:30 AM11:30

Webinar: How Metatranscriptomics and Metagenomics can help you discover novel relationships microbiomes.

Join Dr. Vinayak Kapatral for a webinar entitled “How metatranscriptomics and metagenomics can help you discover novel relationships in microbiomes”.

February 3rd 2021 at 11:30 AM (CT) / 12:30 PM (ET) / 9:30 AM (PT)

Sign Up Today

In this webinar you will learn about:

  • Latest technology to 'denoise' your amplicon sequencing samples to discover which taxa are present.

  • How shotgun metagenomics can tell you both who is there and what they are doing using tools like Squeezemeta.

  • Key analysis techniques for amplicon, metagenome, and metatranscriptome analysis

  • Principal Coordinates Analysis (PCoA) is essential to verify controls and expected sample groups

  • Richness estimates such as Shannon, Chao1, and others can enable you to discover the level diversity of your sample groups

  • Computing differential gene expression using statistical tools like Limma, DESeq2, edgeR

  • Projection of expression data on KEGG pathways in ERGO

  • Gene set enrichment analysis using GAGE to capture subtle metabolic shifts

  • and much more!

View Event →
Dec
15
11:30 AM11:30

Webinar: From Soil to Skin and Gut - How cutting edge analysis techniques can improve your microbiome analysis.

Join Dr. Vinayak Kapatral and learn how you can improve your microbiome analysis.

December 15th 2020 at 11:30 AM (CT) / 12:30 PM (ET) / 9:30 AM (PT)

In this webinar you will learn about:

  • Latest technology to 'denoise' your amplicon sequencing samples to discover which taxa are present.

  • How shotgun metagenomics can tell you both who is there and what they are doing using tools like Squeezemeta.

  • Standard metagenome analysis tools that integrated into ERGO such as Phyloseq and Vegan.

  • Principal Coordinates Analysis (PCoA) is essential to verify controls and expected sample groups

  • Richness estimates such as Shannon, Chao1, and others can enable you to discover the level diversity of your sample groups

  • and much more!

Sign Up Today

View Event →
Dec
8
11:30 AM11:30

Webinar: How ERGO can make analyzing your microarray data a breeze.

Join Dr. Vinayak Kapatral and learn how ERGO can make analyzing your microarray data a breeze.

December 8th 2020 at 11:30 AM Central Time (CT) / 12:30 PM (ET) / 9:30 AM (PT)

In this webinar you will learn about:

  • Different analysis available in ERGO for Affymetrix or Agilent data, including Differential Gene Expression Analysis, Gene Set Enrichment Analysis, and Cluster Analysis.

  • Key plots (such as the volcano plot) to examine while evaluating your expression data

  • Standard Microarray Analysis tools that are integrated into ERGO such as limma and gage.

  • How interactive exploration of your expression data can lead to key insights.

  • and much more!

Sign Up Today

View Event →
Nov
20
11:30 AM11:30

Webinar: How Gene Set Enrichment Analysis can help you unlock your RNA-Seq data

Join Dr. Vinayak Kapatral and learn how Gene Set Enrichment Analysis can help you unlock your RNA-Seq data.

November 20th 2020 at 11:30 AM Central Time (CT) / 12:30 PM (ET) / 9:30 AM (PT)

In this webinar you will learn about:

  • How to use Gene Set Enrichment Analysis to identify key metabolic and pathway shifts in your expression data.

  • Key strengths and weaknesses of using different RNA-Seq quantification tools such as kallisto, salmon, featureCounts, and others.

  • Standard RNA-Seq Analysis tools that are integrated into ERGO such as limma, DESeq2, edgeR, gage, and others.

  • How interactive exploration of your RNA-Seq data can lead to key insights.

  • and much more!

Sign Up Today

View Event →
Oct
15
8:30 AM08:30

Webinar: Denoising & Expression Analysis of Microbiome Data

Join Dr. Vinayak Kapatral and learn how “Denoising” can improve your Microbiome Analysis.

October 15th, 2020 at 8:30 AM CT / 3:30 PM CEST

In this webinar you will learn about:

  • Latest technology to 'denoise' your amplicon sequencing samples to discover which taxa are present.

  • Standard metagenome analysis tools that integrated into ERGO such as Phyloseq and Vegan.

  • Principal Coordinates Analysis (PCoA) is essential to verify controls and expected sample groups

  • Richness estimates such as Shannon, Chao1, and others can enable you to discover the level diversity of your sample groups

  • and much more!

Sign Up Today

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Sep
22
1:00 PM13:00

Webinar: Learn how 'Denoising' can improve your microbiome analysis.

Join Dr. Vinayak Kapatral and learn how “Denoising” can improve your Microbiome Analysis.

September 22nd 2020 at 1 PM Central / 2 PM Eastern / 11AM Pacific

In this webinar you will learn about:

  • Latest technology to 'denoise' your amplicon sequencing samples to discover which taxa are present.

  • Best tools for shotgun metagenomics: Kraken2, Clark, and others.

  • Standard metagenome analysis tools that integrated into ERGO such as Phyloseq and Vegan.

  • Principal Coordinates Analysis (PCoA) is essential to verify controls and expected sample groups

  • Richness estimates such as Shannon, Chao1, and others can enable you to discover the level diversity of your sample groups

  • and much more!

Sign Up Today

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Sep
18
11:30 AM11:30

Webinar: Learn how to unlock your RNA-Seq data's secrets from home

Join Dr. Vinayak Kapatral and learn how to unlock your RNA-Seq data's secrets from home

September 18th 2020 at 11:30 AM Central Time (CDT)

In this webinar you will learn about:

  • Performing RNA-Seq analysis away from the office and lab

  • Key strengths and weaknesses of using different RNA-Seq quantification tools such as kallisto, salmon, featureCounts, and others.

  • Standard RNA-Seq Analysis tools that are integrated into ERGO such as limma, DESeq2, edgeR, gage, and others.

  • How to use Gene Set Enrichment Analysis to identify key metabolic and pathway shifts in your expression data.

  • How ERGO’s interactive KEGG pathways can help you discover your data’s secrets.

  • and much more!

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metabolic_expression_map.png
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Aug
7
11:30 AM11:30

Webinar: Learn Best Practices for Skin Microbiome Analysis

Join Dr. Vinayak Kapatral and learn best practices for skin microbiome analysis.

August 7th 2020 at 11:30 AM Central Time (CDT)

In this webinar you will learn about:

  • Comparing collection methods: Medical Tape, Strips, and swabs.

  • Why you should be using mock community standards and blanks.

  • Comparing best sequencing technologies for Amplicon & Shotgun Metagenomics.

  • Latest technology to 'denoise' your amplicon sequencing samples to discover which taxa are present.

  • Best tools for shotgun metagenomics: Kraken2, Clark, and others.

  • Standard metagenome analysis tools that integrated into ERGO such as Phyloseq and Vegan.

  • Principal Coordinates Analysis (PCoA) is essential to verify controls and expected sample groups

  • Richness estimates such as Shannon, Chao1, and others can enable you to discover the level diversity of your sample groups

  • and much more!

Sign Up Today

View Event →